SEGMENTIHS

NAME

segmentIhs

SYNOPSIS

segmentFst -s 2 -f iHS.normalized.output.txt

DESCRIPTION

Creates genomic segments (bed file) for regions with high wcFst

OPTIONS

Output : 8 columns :
1. Seqid
2. Start (zero based)
3. End (zero based)
4. Average iHS
5. Average high Fst (iHS > -s)
6. N iHS values in segment
7. N high iHS values in segment
8. Segment length
required: -f -- Output from normalizeIHS
optional: -s -- High absolute iHS cutoff [2]

Type: statistics

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.