sga2gff.pl(1)

Convert SGA format into GFF format

Section 1 chip-seq bookworm source

Description

sga2gff.pl - Convert SGA format into GFF format

sga2gff.pl [options] <SGA file>

where options are:

-h|--help

Show this stuff

--db <path>

Use <path> to locate Chrom Id Storable File ’chro_idx.nstorage’

-l|--taglen <taglen>

Set Read length <taglen>

-x

Expand SGA lines into multiple GFF lines

-e|--ext <ext_flag>

Use SGA 6th field to set GFF feature field and store SGA feature into GFF source field

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.