SRF_DUMP_ALL

NAME

srf_dump_all - dump data of SRF files

SYNOPSIS

srf_dump_all [-c chunk_types] [-d destination_types] [-f read_filter] [-n] [-o] [-t type_of_output] archive_name

OPTIONS

Chunk types to output given as a comma delimited list of types. The following types are allowed: "all", "seq", "prb", "int", "nse", "sig2". The default is "all".

Distinations to output to. The following types are allowed: "console", "file", "none". The default is "console". Console and file can be together, but none is exclusive.

The filter to apply to reads in the archive.

If reads match the

filter they are dumped. The filter takes the form of <name>=<value>, where <name> can be "read", "prefix", "file". If the <name> is "read" the value is represents the name of a read to dump. Only the matching read will be dumped. If the <name> is "prefix" the value is represents the prefix of the name of the reads to dump. Only the matching reads will be dumped. If the <name> is "file" the value is a file name where any number of "read" and "prefix" name value pairs can be included, one per line. The default is no filter, which means all reads are dumped.

type_of_output

Type of output.

Only one value allowed.

Currently "text" and "solexa" is supported. The default is "text".