surankco-training(1)
training of random forest using contig features and contig scores
Description
SURANKCO-TRAINING
NAME
surankco-training - training of random forest using contig features and contig scores
SYNOPSIS
surankco-training [options]
DESCRIPTION
Training of random forest using contig features from surankco-feature(1) and contig scores from surankco-score(1).
OPTIONS
|
-f FEATURES, --features=FEATURES |
Indicate a list of surankco feature files (comma separated), correct suffixes are mandatory ("*.features.txt")
|
-d DIRECTORY, --directory=DIRECTORY |
Indicate a directory containing surankco feature files ("*.features.txt")
|
-o OUTPUT.FILENAME, --output.filename=OUTPUT.FILENAME |
Indicate a name for the export of the random forest classifiers (default = "surankco_rfs.RData")
|
-e EXPONENTIAL.QUANTILE, --exponential.quantile=EXPONENTIAL.QUANTILE |
Indicate an exponential distribution quantile to divide scores (default: 0.25)
|
-m MANUAL.THRESHOLDS, --manual.thresholds=MANUAL.THRESHOLDS |
Indicate manual thresholds instead of quantiles, one per score each (comma separated) in the same order as in the score file
|
-h, --help |
Show this help message and exit
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.