VCF2DAG

NAME

vcf2dag

SYNOPSIS

vcf2dag options []

DESCRIPTION

Modify VCF to be able to build a directed acyclic graph (DAG)

OPTIONS

options:
-r, --reference FILE FASTA reference file.

Modify the VCF file so that homozygous regions are included as REF/. calls.
For each ref and alt allele, assign an index. These steps are sufficient to
enable use of the VCF as a DAG (specifically a partially-ordered graph).

Type: transformation

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.