VCF2FASTA

NAME

vcf2fasta

SYNOPSIS

vcf2fasta options [file]

DESCRIPTION

Generates sample_seq:N.fa for each sample, reference sequence, and chromosomal copy N in [0,1... ploidy]. Each sequence in the fasta file is named using the same pattern used for the file name, allowing them to be combined.

OPTIONS

options:
-f, --reference REF Use this reference when decomposing samples.
-p, --prefix PREFIX Affix this output prefix to each file, none by default
-P, --default-ploidy N Set a default ploidy for samples which do not have information in the first record (2).

Type: transformation

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.