vcfannotategenotypes(1)
\f[B]vcfannotategenotypes\f[R]
Description
VCFANNOTATEGENOTYPES
NAME
vcfannotategenotypes
SYNOPSIS
vcfannotategenotypes
DESCRIPTION
Examine genotype correspondence. Annotate genotypes in the first file with genotypes in the second adding the genotype as another flag to each sample filed in the first file. annotation-tag is the name of the sample flag which is added to store the annotation. also adds a ‘has_variant’ flag for sites where the second file has a variant.
OPTIONS
Type: transformation
EXIT VALUES
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0 |
Success |
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not 0 |
Failure |
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
AUTHORS
Erik Garrison and vcflib contributors.