VCFCHECK

NAME

vcfcheck

SYNOPSIS

vcfcheck options

DESCRIPTION

Validate integrity and identity of the VCF by verifying that the VCF record’s REF matches a given reference file.

OPTIONS

options:
-f, --fasta-reference FASTA reference file to use to obtain primer sequences
-x, --exclude-failures If a record fails, don't print it. Otherwise do.
-k, --keep-failures Print if the record fails, otherwise not.
-h, --help Print this message.
-v, --version Print version.

Type: metrics

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.