vcfentropy(1)
\f[B]vcfentropy\f[R]
Description
VCFENTROPY
NAME
vcfentropy
SYNOPSIS
vcfentropy options
DESCRIPTION
Annotate VCF records with the Shannon entropy of flanking sequence. Anotates the output VCF file with, for each record, EntropyLeft, EntropyRight, EntropyCenter, which are the entropies of the sequence of the given window size to the left, right, and center of the record. Also adds EntropyRef and EntropyAlt for each alt.
OPTIONS
options:
-f, --fasta-reference FASTA reference file to use to obtain
flanking sequences
-w, --window-size Size of the window over which to calculate
entropy
Type: metrics
EXIT VALUES
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0 |
Success |
|||
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not 0 |
Failure |
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
AUTHORS
Erik Garrison and vcflib contributors.