vcfremoveaberrantgenotypes(1)
\f[B]vcfremoveaberrantgenotypes\f[R]
Description
VCFREMOVEABERRANTGENOTYPES
NAME
vcfremoveaberrantgenotypes
SYNOPSIS
vcfremoveaberrantgenotypes
DESCRIPTION
strips samples which are homozygous but have observations implying heterozygosity. Remove samples for which the reported genotype (GT) and observation counts disagree (AO, RO).
OPTIONS
Type: transformation
EXIT VALUES
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0 |
Success |
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not 0 |
Failure |
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
AUTHORS
Erik Garrison and vcflib contributors.