vcfsamplediff(1)
\f[B]vcfsamplediff\f[R]
Description
VCFSAMPLEDIFF
NAME
vcfsamplediff
SYNOPSIS
vcfsamplediff options [ ... ]
DESCRIPTION
Establish putative somatic variants using reported differences between germline and somatic samples. Tags each record where the listed sample genotypes differ with . The first sample is assumed to be germline, the second somatic. Each record is tagged with ={germline,somatic,loh} to specify the type of variant given the genotype difference between the two samples.
OPTIONS
options:
-s --strict Require that no observations in the germline
support the somatic alternate.
Type: transformation
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
AUTHORS
Erik Garrison and vcflib contributors.