vcfsitesummarize(1)
\f[B]vcfsitesummarize\f[R]
Description
VCFSITESUMMARIZE
NAME
vcfsitesummarize
SYNOPSIS
vcfsitesummarize
DESCRIPTION
Summarize by site
EXAMPLES
Example:
**vcfsitesummarize** samples/sample.vcf
CHROM POS ID
REF QUAL FILTER AA AC AF AN DP NS DB H2
19 111 . A 9.6 . 0 0
19 112 . A 10 . 0 0
20 14370 rs6054257 G 29 PASS 0.5 14 3 1 1
20 17330 . T 3 q10 0.017 11 3 0 0
20 1110696 rs6040355 A 67 PASS T 10 2 1 0
20 1230237 . T 47 PASS T 13 3 0 0
20 1234567 microsat1 G 50 PASS G 6 9 3 0 0
20 1235237 . T 0 . 0 0
X 10 rsTest AC 10 PASS
Type: statistics
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
AUTHORS
Erik Garrison and vcflib contributors.