vcfstreamsort(1)

\f[B]vcfstreamsort\f[R]

Section 1 libvcflib-tools bookworm source

Description

VCFSTREAMSORT

NAME

vcfstreamsort

SYNOPSIS

vcfstreamsort options [vcf file]

DESCRIPTION

Sorts the input (either stdin or file) using a streaming sort algorithm. Guarantees that the positional order is correct provided out-of-order variants are no more than 100 positions in the VCF file apart.

OPTIONS

options:

-h, --help this dialog
-w, --window N number of sites to sort (default 10000)
-a, --all load all sites and then sort in memory

Type: transformation

EXIT VALUES

	0		Success
	not 0		Failure

OTHER

LICENSE

AUTHORS

Erik Garrison and vcflib contributors.