IsoSpec::MarginalTrek

NAME

IsoSpec::MarginalTrek - The marginal distribution class (a subisotopologue).

SYNOPSIS

#include <marginalTrek++.h>

Inherits IsoSpec::Marginal.

Public Member Functions

MarginalTrek (Marginal &&m, int tabSize=1000, int hashSize=1000)
Move constructor: specializes the Marginal class.
MarginalTrek (const MarginalTrek &other)=delete
MarginalTrek & operator= (const MarginalTrek &other)=delete
bool probeConfigurationIdx (int idx)
Check if the table of computed subisotopologues does not have to be extended.
double getModeLProb () const
Get the log-probability of the mode subisotopologue.
const pod_vector< double > & conf_lprobs () const
const pod_vector< double > & conf_masses () const
const pod_vector< Conf > & confs () const

Additional Inherited Members

Detailed Description

The marginal distribution class (a subisotopologue).

Definition at line 175 of file marginalTrek++.h.

Constructor & Destructor Documentation

IsoSpec::MarginalTrek::MarginalTrek (Marginal && m, int tabSize = 1000, inthashSize = 1000)

Move constructor: specializes the Marginal class.

Parameters

tabSize The size of the table used to store configurations in the allocator.
hashSize The size of the hash table used to store visited subisotopologues.

Definition at line 323 of file marginalTrek++.cpp.

IsoSpec::MarginalTrek::˜MarginalTrek () [virtual]

Definition at line 434 of file marginalTrek++.cpp.

Member Function Documentation

const pod_vector< double > & IsoSpec::MarginalTrek::conf_lprobs () const[inline]

Definition at line 233 of file marginalTrek++.h.

const pod_vector< double > & IsoSpec::MarginalTrek::conf_masses () const[inline]

Definition at line 234 of file marginalTrek++.h.

const pod_vector< Conf > & IsoSpec::MarginalTrek::confs () const [inline]

Definition at line 235 of file marginalTrek++.h.

double IsoSpec::MarginalTrek::getModeLProb () const [inline]

Get the log-probability of the mode subisotopologue.

Returns

The log-probability of a/the most probable subisotopologue.

Definition at line 230 of file marginalTrek++.h.

bool IsoSpec::MarginalTrek::probeConfigurationIdx (int idx) [inline]

Check if the table of computed subisotopologues does not have to be extended. This function checks if the idx-th most probable subisotopologue was memoized and if not, computes it and memoizes it.

Parameters

idx The number of the idx-th most probable subisotopologue.

Returns

Returns false if it the provided idx exceeds the total number of subisotopologues.

Definition at line 218 of file marginalTrek++.h.

Author

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