Bbmap
- bbduk.sh(1) Filters, trims, or masks reads with kmer matches to an artifact/contaminant file
- bbmap.sh(1) Fast and accurate splice-aware read aligner.
- bbnorm.sh(1) Kmer-based error-correction and normalization tool
- bloomfilter.sh(1) Filters reads potentially sharing a kmer with a reference
- dedupe.sh(1) Simplifies assemblies by removing duplicate or contained
- reformat.sh(1) Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64