Bcftools

• bcftools(1) utilities for variant calling and manipulating VCFs and BCFs.
• color-chrs.pl(1) Plot output of "bcftools +color-chrs"
• plot-vcfstats(1) plot statistics for genomic variants in a VCF file
• vcfutils.pl(1) utilities to manipulate files in the Variant Call Format (VCF)