Bowtie

• bowtie-build-debug(1) building a colorspace index for bowtie
• bowtie-build(1) building a colorspace index for bowtie
• bowtie-debug(1) ultrafast memory-efficient short read aligner
• bowtie-inspect-debug(1) extracts information from a bowtie index
• bowtie-inspect(1) extracts information from a bowtie index
• bowtie(1) ultrafast memory-efficient short read aligner