Bowtie2

• bowtie2-align-l(1) ultrafast and memory-efficient backend tool for aligning sequencing reads to long reference sequences
• bowtie2-align-s(1) ultrafast and memory-efficient backend tool for aligning sequencing reads to long reference sequences
• bowtie2-build-l(1) building a colorspace index for bowtie2
• bowtie2-build-s(1) building a colorspace index for bowtie2
• bowtie2-build(1) wrapper for bowtie2-build-*
• bowtie2-inspect-l(1) extracts information from a bowtie2 index
• bowtie2-inspect-s(1) extracts information from a bowtie2 index
• bowtie2-inspect(1) wrapper for bowtie2-inspect-* index
• bowtie2(1) wrapper for bowtie2-align-*