Bppsuite

• bppalnscore(1) bppalnscore - Bio++ alignment scoring
• bppancestor(1) bppml - Ancestral sequence reconstruction with Bio++
• bppconsense(1) bppconsense - Tree consensus analysis with Bio++
• bppdist(1) bppdist - Distance methods for phylogenetic reconstruction with Bio++
• bppmixedlikelihoods(1) bppmixedlikelihoods - Computation of site per site likelihoods of components of mixture models.
• bppml(1) bppml - Maximum likelihood phylogenetic analysis with Bio++
• bpppars(1) bpppars - Parsimony phylogenetic analysis with Bio++
• bpppopstats(1) bpppopstats - Population genetics with Bio++
• bppreroot(1) bppreroot - Sequential rerooting of trees with Bio++
• bppseqgen(1) bppseqgen - Sequence simulation with Bio++
• bppseqman(1) bppseqman - Bio++ sequence manipulation and in silico molecular biology with Bio++
• bpptreedraw(1) bpptreedraw - Phylogenetic tree drawing with Bio++