Bppsuite

• bppalnscore(1) Bio++ alignment scoring
• bppancestor(1) bppml - Ancestral sequence reconstruction with Bio++
• bppconsense(1) Tree consensus analysis with Bio++
• bppdist(1) Distance methods for phylogenetic reconstruction with Bio++
• bppmixedlikelihoods(1) Computation of site per site likelihoods of components of mixture models.
• bppml(1) Maximum likelihood phylogenetic analysis with Bio++
• bpppars(1) Parsimony phylogenetic analysis with Bio++
• bpppopstats(1) Population genetics with Bio++
• bppreroot(1) Sequential rerooting of trees with Bio++
• bppseqgen(1) Sequence simulation with Bio++
• bppseqman(1) Bio++ sequence manipulation and in silico molecular biology with Bio++
• bpptreedraw(1) Phylogenetic tree drawing with Bio++