Cd-Hit

• cd-hit-2d-para(1) divide a big clustering job into pieces to run cd-hit-2d or cd-hit-est-2d jobs
• cd-hit-2d(1) quickly group sequences in db1 or db2 format
• cd-hit-454(1) quickly group sequences, optimised for 454 data
• cd-hit-div(1) divide a FASTA file into pieces
• cd-hit-est-2d(1) run CD-HIT algorithm on RNA/DNA sequences in db1 or db2 format
• cd-hit-est(1) run CD-HIT algorithm on RNA/DNA sequences
• cd-hit-para(1) divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
• cd-hit(1) quickly group sequences