Chip-Seq

• bed2bed_display(1) Convert BED file to BED format suitable for displaying ChIP-seq peaks.
• bed2sga(1) Convert BED format into SGA format.
• chipcenter(1) Feature Centering Tool for ChIP-seq data analysis
• chipcor(1) Feature Correlation Tool for ChIP-seq data analysis
• chipextract(1) Feature Correlation and Extraction Tool for ChIP-seq data analysis
• chippart(1) Partitioning Tool for ChIP-seq data analysis
• chippeak(1) Locates signal peaks within a set of tags positions produced by a ChIP-Seq experiment
• chipscore(1) Feature Extraction Tool for ChIP-seq data analysis
• compactsga(1) reads a ChIP-seq data file and merges equal tag positions into a single line
• countsga(1) read a ChIP-seq data file and computes the total number of tag counts
• featreplace(1) read a ChIP-seq data file and changes the name of the feature field
• filter_counts(1) read a ChIP-seq data file and filters out all read counts
• fps2sga.pl(1) convert fps to sga
• gff2sga.pl(1) convert gff to sga
• partit2bed.pl(1) converts the output of the ChIP-Seq partitioning program to BED format
• sga2bed(1) Convert SGA format into BED format
• sga2fps.pl(1) Convert SGA format into FPS format
• sga2gff.pl(1) Convert SGA format into GFF format
• sga2wig(1) Convert SGA format into Wiggle Track format