Cmtk
- cmtk-asegment_sri24(1) Segmentation using SRI24 atlas
- cmtk-asegment(1) Atlas-based segmentation
- cmtk-average_affine(1) Average affine transformations
- cmtk-average_images(1) Average images
- cmtk-average_labels(1) Label image averaging
- cmtk-avg_adm(1) Average using ADM
- cmtk-concat_affine(1) Concatenate affine transformations
- cmtk-convert_warp(1) Convert nonrigd transformations.
- cmtk-convertx(1) Convert between image file formats and data types.
- cmtk-dbtool(1) Image/transformation database maintenance and query tool
- cmtk-describe(1) Describe image and transformation file formats and parameters
- cmtk-destripe(1) Destripe volume image data.
- cmtk-detect_adni_phantom(1) Detect ADNI phantom landmarks in phantom image
- cmtk-detect_spheres_matched_filter(1) Detect spheres
- cmtk-dof2mat(1) Degrees of freedom to matrix
- cmtk-dwi_mask_bad_slices(1) Find bad slices in set of diffusion-weighted images.
- cmtk-epiunwarp(1) Unwarp Echo Planar Images
- cmtk-fib2image(1) Draw image from point coordinates of fiber tracks from .fib file.
- cmtk-fibxform(1) Apply coordinate transformations to point coordinates in .fib file.
- cmtk-film(1) Fix interleaved motion using inverse interpolation
- cmtk-filter(1) Filter a volume image
- cmtk-fit_affine_dfield(1) Fit Affine Transformation to Nonrigid Transformation
- cmtk-fit_affine_xform_landmarks(1) Fit Affine Transformation to Landmarks
- cmtk-fit_affine_xform(1) Fit Single Affine Transformation to Concatenated List
- cmtk-fit_spline_dfield(1) Deformation Field to Transformation
- cmtk-fit_spline_xform(1) Fit Single B-Spline Transformation to Concatenated Transformation List
- cmtk-geomatch(1) Check whether the geometries (e.g., grid dimensions, pixel sizes, spatial coordinates) or two or more images match.
- cmtk-glm(1) General Linear Model
- cmtk-gmm(1) Gaussian mixture model segmentation
- cmtk-gregxform(1) Apply coordinate transformations to lists of point coordinates
- cmtk-groupwise_affine(1) Affine population registration
- cmtk-groupwise_init(1) Affine initialization for groupwise registration
- cmtk-groupwise_warp(1) Nonrigid population registration
- cmtk-hausdorff(1) Hausdorff Distance.
- cmtk-histogram(1) Image histogram
- cmtk-imagemath(1) Image operations
- cmtk-interleaved_bad_slices(1) Find bad slices in a time series of interleaved images (e.g., a resting-state fMRI series).
- cmtk-iterative_shape_averaging(1) Iterative Shape Averging USAGE: /build/cmtk-1dBBe8/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/iterative_shape_averag
- cmtk-jidb(1) Fix interleaved motion using joint iterative deblurring
- cmtk-levelset(1) Levelset segmentation
- cmtk-lmsba(1) Local voting.
- cmtk-lsba(1) Local voting.
- cmtk-lvote(1) Local voting.
- cmtk-make_initial_affine(1) Initialize affine transformation
- cmtk-mat2dof(1) Matrix to degrees of freedom
- cmtk-mcaffine(1) Multi-channel affine registration
- cmtk-mcwarp(1) Multi-channel nonrigid registration
- cmtk-mk_adni_phantom(1) Generate ADNI phantom image
- cmtk-mk_analyze_hdr(1) Make Analyze header file
- cmtk-mk_nifti_hdr(1) Make NIFTI header file
- cmtk-mk_phantom_3d(1) Generate phantom image
- cmtk-mrbias(1) MR Image Intensity Bias Field Correction
- cmtk-overlap(1) Overlap computation
- cmtk-probe(1) Probe image data.
- cmtk-pxsearch(1) Search image neighborhoods for pixels.
- cmtk-reformatx(1) Volume reformatter
- cmtk-registration(1) Rigid and affine registration
- cmtk-registrationx(1) Rigid and affine registration
- cmtk-regress(1) Regression
- cmtk-reorient(1) Reorientation
- cmtk-sba(1) Shape-based Averaging of label images
- cmtk-sbai(1) Shape-Based Averaging and interpolation of label images
- cmtk-sequence(1) Value sequence
- cmtk-similarity(1) Image similarity
- cmtk-split(1) Split images
- cmtk-statistics(1) Image statistics
- cmtk-stream_pixels(1) Stream pixel data from one or more images to Standard Output.
- cmtk-streamxform(1) Apply coordinate transformation to point coordinates from text stream.
- cmtk-sympl(1) Symmetry plane computation
- cmtk-symplx(1) Symmetry plane computation
- cmtk-ttest(1) T-tests
- cmtk-unsplit(1) Unsplit images
- cmtk-unwarp_image_phantom(1) Create transformation to unwarp an image based on a phantom description
- cmtk-vol2csv(1) Compute regional volumes and write to CSV file.
- cmtk-volume_injection(1) Volume injection
- cmtk-volume_reconstruction(1) Volume reconstruction
- cmtk-vtkxform(1) Apply coordinate transformation to point coordinates in VTK file.
- cmtk-warp(1) B-spline nonrigid registration
- cmtk-warp2ps(1) Deformation to PostScript
- cmtk-warpx(1) B-spline nonrigid registration
- cmtk-xform2dfield(1) Transformation to Deformation Field
- cmtk-xform2itk(1) Convert affine transformations to ITK format.
- cmtk-xform2scalar(1) Extract scalar measures from transformations and deformation fields
- cmtk(1) the Computational Morphometry Toolkit