Codonw
- codonw-aau(1) calculate Amino Acid Usage (AAU)
- codonw-base3s(1) silent base G+C+A+T calculating program
- codonw-bases(1) detailed report of base composition
- codonw-cai(1) calculate Codon Adaptation Index (CAI)
- codonw-cbi(1) calculate Codon Bias Index (CBI)
- codonw-cu(1) calculate codon usage
- codonw-cutab(1) tabulation of codon usage
- codonw-cutot(1) tabulation of datasets codon usage
- codonw-dinuc(1) dinucleotide usage of the three codon positions
- codonw-enc(1) calculate Effective Number of Codons (ENc)
- codonw-fop(1) calculate Frequency of OPtimal codons index (FOP)
- codonw-gc(1) G+C content of gene (all 3 codon positions)
- codonw-gc3s(1) GC of synonymous codons 3rd positions
- codonw-raau(1) calculate Relative Amino Acid Usage (RAAU)
- codonw-reader(1) output sequence in reader format
- codonw-rscu(1) calculate Relative Synonymous Codon Usage (RSCU)
- codonw-tidy(1) clean up sequence in FASTA format
- codonw-transl(1) conceptual translation of DNA to amino acid
- codonw(1) Correspondence Analysis of Codon Usage