Coop-Computing-Tools

• allpairs_master(1) allpairs_master - executes All-Pairs workflow in parallel on distributed systems
• allpairs_multicore(1) allpairs_multicore - executes All-Pairs workflow in parallel on a multicore machine
• catalog_query(1) catalog_query - query records from the catalog server
• catalog_server(1) catalog_server - start a catalog server
• catalog_update(1) catalog_update - send update to catalog server
• chirp_audit_cluster(1) share resources in a heterogeneous, and unreliable
• chirp_benchmark(1) chirp_benchmark - do micro-performance tests on a Chirp server
• chirp_distribute(1) chirp_distribute - copy a directory from one Chirp server to one or more Chirp server(s).
• chirp_fuse(1) chirp_fuse - create a \FCFUSE\FT mount point with virtual access to remote chirp servers
• chirp_get(1) chirp_get - get a single file from a Chirp server to local machine
• chirp_md5sum(1) share resources in a heterogeneous, and unreliable
• chirp_put(1) chirp_put - copy a single file from local machine to a Chirp server
• chirp_server_hdfs(1) chirp_server_hdfs - run a chirp server with HDFS client setup
• chirp_server(1) chirp_server - create a Chirp user-level filesystem
• chirp_status(1) chirp_status - get current status of a one or more Chirp server(s)
• chirp_stream_files(1) chirp_stream_files - move data to/from chirp servers in parallel
• chirp(1) chirp - command line tool providing explicit control of a Chirp server.
• chroot_package_run(1) chroot_package_run - repeat a program within the package with the help of \FCchroot\FT
• condor_submit_makeflow(1) condor_submit_makeflow - submit workflow to HTCondor batch system
• condor_submit_workers(1) condor_submit_workers - submit work_queue_worker to the Condor grid.
• confuga_adm(1) Confuga Administration - Administrating the Confuga cluster.
• confuga(1) Confuga - An active storage cluster file system.
• coop-computing-tools(1) share resources in a heterogeneous, and unreliable
• deltadb_query(1) deltadb_query - query historical data stored by the catalog server.
• disk_allocator(1) disk_allocator - tool for creating and deleting loop device allocations of a given size.
• jx_repl(1) jx_repl - interactive command line tool to explore the JX language.
• make_growfs(1) make_growfs - generate directory listings for the GROW filesystem
• makeflow_amazon_batch_cleanup(1) makeflow_amazon_batch_cleanup - clean up Amazon services after running Makeflow
• makeflow_amazon_batch_setup(1) makeflow_amazon_batch_setup - set up Amazon services for running Makeflow
• makeflow_analyze(1) makeflow_analyze - analysis of Makeflow workflows
• makeflow_blast(1) makeflow_blast - Generate a Makeflow to parallelize and distribute blastall jobs
• makeflow_ec2_cleanup(1) makeflow_ec2_cleanup - clean up Amazon services after running Makeflow
• makeflow_ec2_setup(1) makeflow_ec2_setup - set up Amazon services for running Makeflow
• makeflow_graph_log(1) makeflow_graph_log - convert a makeflow log into a graph
• makeflow_linker(1) makeflow_linker - automatic dependency location for workflows
• makeflow_log_parser(1) share resources in a heterogeneous, and unreliable
• makeflow_monitor(1) makeflow_monitor - Makeflow log monitor
• makeflow_mpi_starter(1) makeflow_mpi_starter - mpi wrapper program for makeflow and workqueue
• makeflow_status(1) makeflow_status - command line tool retrieving the status of makeflow programs.
• makeflow_viz(1) makeflow_viz - visualization of Makeflow workflows
• makeflow(1) makeflow - workflow engine for executing distributed workflows
• maker_wq(1) maker_wq - Run the Maker genome annotation tool using Work Queue to harness heterogenous resources
• mpi_queue_worker(1) share resources in a heterogeneous, and unreliable
• parrot_cp(1) parrot_cp - a replacement for \FCcp\FT that provides higher performance when dealing with remote files via
• parrot_getacl(1) parrot_getacl - get ACL information for Parrot filesystem
• parrot_identity_box(1) share resources in a heterogeneous, and unreliable
• parrot_locate(1) parrot_locate - provides the true location of the data stored in a named file.
• parrot_lsalloc(1) parrot_lsalloc - list current status of a space allocation
• parrot_md5(1) parrot_md5 - returns the MD5 checksum of a file, generated on the remote system if possible.
• parrot_mkalloc(1) parrot_mkalloc - create a directory with a space allocation
• parrot_mount(1) parrot_mount - mount new directories inside of a Parrot instance.
• parrot_namespace(1) parrot_namespace - run a command in a modified namespace.
• parrot_package_create(1) parrot_package_create - generate a package based on the accessed files and the preserved environment variables
• parrot_package_run(1) parrot_package_run - repeat a program within the package with the help of \FCparrot_run\FT
• parrot_run(1) parrot_run - run a program in the Parrot virtual file system
• parrot_setacl(1) parrot_setacl - set ACL information for Parrot filesystem
• parrot_timeout(1) parrot_timeout - changes or resets the main timeout for the current parrot session
• parrot_whoami(1) parrot_whoami - returns the user's credentials (id and authentication method) from the perspective of the system being
• pbs_submit_workers(1) pbs_submit_workers - submit work_queue_worker to a PBS cluster.
• replica_exchange(1) replica_exchange - Work Queue application for running replica exchange simulations using ProtoMol
• resource_monitor_histograms(1) resource_monitor_histograms - create HTML pages and graphs of resource monitor data
• resource_monitor_visualizer(1) resource_monitor_visualizer - create HTML pages and graphs of resource monitor data
• resource_monitor(1) resource_monitor - monitors the cpu, memory, io, and disk usage of a tree of processes.
• sand_align_kernel(1) sand_align_kernel - align candidate sequences sequentially
• sand_align_master(1) sand_align_master - align candidate sequences in parallel
• sand_compress_reads(1) sand_compress_reads - compress sequence data
• sand_filter_kernel(1) sand_filter_kernel - filter read sequences sequentially
• sand_filter_master(1) sand_filter_master - filter sequences for alignment in parallel
• sand_runCA_5.4(1) share resources in a heterogeneous, and unreliable
• sand_runCA_6.1(1) share resources in a heterogeneous, and unreliable
• sand_runCA_7.0(1) share resources in a heterogeneous, and unreliable
• sand_runCA(1) share resources in a heterogeneous, and unreliable
• sand_uncompress_reads(1) sand_uncompress_reads - uncompress sequence data
• sge_submit_workers(1) sge_submit_workers - submit work_queue_worker to a SUN Grid Engine (SGE).
• slurm_submit_workers(1) slurm_submit_workers - submit work_queue_worker to a SLURM cluster.
• split_fasta(1) split_fasta - Split a fasta file according to sequence and character counts
• starch.bin(1) share resources in a heterogeneous, and unreliable
• starch(1) starch - STandalone application ARCHiver
• torque_submit_workers(1) torque_submit_workers - submit work_queue_worker to a Torque cluster.
• wavefront_master(1) wavefront_master - executes Wavefront workflow in parallel on distributed systems
• wavefront(1) share resources in a heterogeneous, and unreliable
• weaver(1) weaver - workflow engine for executing distributed workflows
• work_queue_factory(1) work_queue_factory - maintain a pool of Work Queue workers on a batch system.
• work_queue_graph_log(1) work_queue_graph_log - plots Work Queue statistics logs.
• work_queue_pool(1) work_queue_pool - maintain a pool of Work Queue workers on a batch system.
• work_queue_status(1) work_queue_status - display status of currently running Work Queue applications.
• work_queue_worker(1) work_queue_worker - worker process for executing tasks dispatched through Work Queue