Fastlink
- ilink(1) GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions
- linkmap(1) calculates location scores of one locus against a fixed map of other loci
- lodscore(1) compares likelihoods at locally optimal theta
- mlink(1) calculates lod scores and risk with two of more loci
- unknown(1) identify possible genotypes for unknowns