Fsa

• fsa-translate(1) Translate input nucleotide sequences into protein sequence
• fsa(1) Distance-based alignment of DNA, RNA and proteins
• gapcleaner(1) Find the most-parsimonious ordering of indels
• isect_mercator_alignment_gff(1) Extracts subalignments from a Mercator multiple alignment for the features in the GFF file
• map_coords(1) Map coordinates from one genome to another using a Mercator multiple alignment
• map_gff_coords(1) Map coordinates of GFF features from one genome to another using a Mercator multiple alignment
• percentid(1) Calculate the percentage identity of the passed alignment
• prot2codon(1) Find the codon alignment corresponding to the given protein alignment
• slice_fasta_gff(1) Slice subsequences from an input FASTA file
• slice_fasta(1) Slice a subsequence from an input FASTA file
• slice_mercator_alignment(1) Extracts the corresponding subalignment from a Mercator multiple alignment