Genomethreader
- align_dna(1) spliced align genomic sequence with cDNA
- gth(1) predict genome structures
- gthbssmbuild(1) build splice site model
- gthbssmfileinfo(1) show info about splice site model
- gthbssmprint(1) print splice site model
- gthbssmrmsd(1) calculate distance between splice site models
- gthbssmtrain(1) train splice site model
- gthconsensus(1) build consensus spliced alignments
- gthfilestat(1) show statistics about consensus spliced alignments
- gthgetseq(1) get FASTA sequences from GenomeThreader files
- gthmkbssmfiles(1) rite hard coded BSSM files
- gthsplit(1) split GenomeThreader output files