Hmmer2
- hmm2align(1) align sequences to an HMM profile
- hmm2build(1) build a profile HMM from an alignment
- hmm2calibrate(1) calibrate HMM search statistics
- hmm2convert(1) convert between profile HMM file formats
- hmm2emit(1) generate sequences from a profile HMM
- hmm2fetch(1) retrieve an HMM from an HMM database
- hmm2index(1) create a binary SSI index for an HMM database
- hmm2pfam(1) search one or more sequences against an HMM database
- hmm2search(1) search a sequence database with a profile HMM
- hmmer2(1) HMMER - profile hidden Markov model software