Infernal

• cmalign(1) cmalign - align sequences to a covariance model
• cmbuild(1) cmbuild - construct covariance model(s) from structurally annotated RNA multiple sequence alignment(s)
• cmcalibrate(1) cmcalibrate - fit exponential tails for covariance model E-value determination
• cmconvert(1) cmconvert - convert Infernal covariance model files
• cmemit(1) cmemit - sample sequences from a covariance model
• cmfetch(1) cmfetch - retrieve covariance model(s) from a file
• cmpress(1) cmpress - prepare a covariance model database for cmscan
• cmscan(1) cmscan - search sequence(s) against a covariance model database
• cmsearch(1) cmsearch - search covariance model(s) against a sequence database
• cmstat(1) cmstat - summary statistics for a covariance model file
• infernal(1) Infernal - sequence analysis using profiles of RNA sequence and secondary structure consensus