Last-Align

• fasta-nr(1) Keep the first of identical sequences
• fastq-interleave(1) Read 2 fastq files, and write them interleaved
• last-dotplot(1) make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format
• last-map-probs(1) Add extra column with mapping probabilities
• last-merge-batches(1) Read files of lastal output, merge corresponding batches, and write them
• last-pair-probs(1) Read alignments of paired DNA reads to a genome, and do estimations
• last-postmask(1) Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters
• last-split(1) Estimates "split" or "spliced" alignments.
• last-split5(1) Estimates "split" or "spliced" alignments.
• last-train(1) Try to find suitable score parameters for aligning the given sequences
• lastal(1) genome-scale comparison of biological sequences
• lastal5(1) genome-scale comparison of biological sequences
• lastdb(1) genome-scale comparison of biological sequences
• maf-convert(1) Convert MAF-format alignments to tabular format
• maf-cut(1) manual page for maf-cut 1447
• maf-join(1) Join two or more sets of MAF-format multiple alignments
• maf-sort(1) Sort MAF-format alignments by sequence name
• maf-swap(1) changes the order of the sequences in MAF-format alignments