Libvcflib-Tools
- abba-baba(1) \f[B]abba-baba\f[R]
- bFst(1) \f[B]bFst\f[R]
- dumpContigsFromHeader(1) \f[B]dumpContigsFromHeader\f[R]
- genotypeSummary(1) \f[B]genotypeSummary\f[R]
- hapLrt(1) \f[B]hapLrt\f[R]
- iHS(1) \f[B]iHS\f[R]
- meltEHH(1) \f[B]meltEHH\f[R]
- normalize-iHS(1) \f[B]normalize-iHS\f[R]
- permuteGPAT++(1) \f[B]permuteGPAT++\f[R]
- permuteSmooth(1) \f[B]permuteSmooth\f[R]
- pFst(1) \f[B]pFst\f[R]
- plotHaps(1) \f[B]plotHaps\f[R]
- popStats(1) \f[B]popStats\f[R]
- pVst(1) \f[B]pVst\f[R]
- segmentFst(1) \f[B]segmentFst\f[R]
- segmentIhs(1) \f[B]segmentIhs\f[R]
- sequenceDiversity(1) \f[B]sequenceDiversity\f[R]
- smoother(1) \f[B]smoother\f[R]
- vcf2dag(1) \f[B]vcf2dag\f[R]
- vcf2fasta(1) \f[B]vcf2fasta\f[R]
- vcf2tsv(1) \f[B]vcf2tsv\f[R]
- vcfaddinfo(1) \f[B]vcfaddinfo\f[R]
- vcfafpath(1) \f[B]vcfafpath\f[R]
- vcfallelicprimitives(1) \f[B]vcfallelicprimitives\f[R]
- vcfaltcount(1) \f[B]vcfaltcount\f[R]
- vcfannotate(1) \f[B]vcfannotate\f[R]
- vcfannotategenotypes(1) \f[B]vcfannotategenotypes\f[R]
- vcfbreakmulti(1) \f[B]vcfbreakmulti\f[R]
- vcfcat(1) \f[B]vcfcat\f[R]
- vcfcheck(1) \f[B]vcfcheck\f[R]
- vcfclassify(1) \f[B]vcfclassify\f[R]
- vcfcleancomplex(1) \f[B]vcfcleancomplex\f[R]
- vcfcombine(1) \f[B]vcfcombine\f[R]
- vcfcommonsamples(1) \f[B]vcfcommonsamples\f[R]
- vcfcountalleles(1) \f[B]vcfcountalleles\f[R]
- vcfcreatemulti(1) \f[B]vcfcreatemulti\f[R]
- vcfdistance(1) \f[B]vcfdistance\f[R]
- vcfecho(1) \f[B]vcfecho\f[R]
- vcfentropy(1) \f[B]vcfentropy\f[R]
- vcfevenregions(1) \f[B]vcfevenregions\f[R]
- vcffilter(1) \f[B]vcffilter\f[R]
- vcffixup(1) \f[B]vcffixup\f[R]
- vcfflatten(1) \f[B]vcfflatten\f[R]
- vcfgeno2alleles(1) \f[B]vcfgeno2alleles\f[R]
- vcfgeno2haplo(1) \f[B]vcfgeno2haplo\f[R]
- vcfgenosamplenames(1) \f[B]vcfgenosamplenames\f[R]
- vcfgenosummarize(1) \f[B]vcfgenosummarize\f[R]
- vcfgenotypecompare(1) \f[B]vcfgenotypecompare\f[R]
- vcfgenotypes(1) \f[B]vcfgenotypes\f[R]
- vcfglbound(1) \f[B]vcfglbound\f[R]
- vcfglxgt(1) \f[B]vcfglxgt\f[R]
- vcfhetcount(1) \f[B]vcfhetcount\f[R]
- vcfhethomratio(1) \f[B]vcfhethomratio\f[R]
- vcfindex(1) \f[B]vcfindex\f[R]
- vcfinfo2qual(1) \f[B]vcfinfo2qual\f[R]
- vcfinfosummarize(1) \f[B]vcfinfosummarize\f[R]
- vcfintersect(1) \f[B]vcfintersect\f[R]
- vcfkeepgeno(1) \f[B]vcfkeepgeno\f[R]
- vcfkeepinfo(1) \f[B]vcfkeepinfo\f[R]
- vcfkeepsamples(1) \f[B]vcfkeepsamples\f[R]
- vcfld(1) \f[B]vcfld\f[R]
- vcfleftalign(1) \f[B]vcfleftalign\f[R]
- vcflength(1) \f[B]vcflength\f[R]
- vcflib(1) \f[B]vcflib\f[R] index
- vcfnulldotslashdot(1) vcfnulldotslashdot converts single dots to ./. This is useful for some downstream analysis tools.
- vcfnumalt(1) \f[B]vcfnumalt\f[R]
- vcfoverlay(1) \f[B]vcfoverlay\f[R]
- vcfparsealts(1) \f[B]vcfparsealts\f[R]
- vcfprimers(1) \f[B]vcfprimers\f[R]
- vcfqual2info(1) \f[B]vcfqual2info\f[R]
- vcfrandom(1) \f[B]vcfrandom\f[R]
- vcfrandomsample(1) \f[B]vcfrandomsample\f[R]
- vcfremap(1) \f[B]vcfremap\f[R]
- vcfremoveaberrantgenotypes(1) \f[B]vcfremoveaberrantgenotypes\f[R]
- vcfremovesamples(1) \f[B]vcfremovesamples\f[R]
- vcfroc(1) \f[B]vcfroc\f[R]
- vcfsample2info(1) \f[B]vcfsample2info\f[R]
- vcfsamplediff(1) \f[B]vcfsamplediff\f[R]
- vcfsamplenames(1) \f[B]vcfsamplenames\f[R]
- vcfsitesummarize(1) \f[B]vcfsitesummarize\f[R]
- vcfstats(1) \f[B]vcfstats\f[R]
- vcfstreamsort(1) \f[B]vcfstreamsort\f[R]
- vcfuniq(1) \f[B]vcfuniq\f[R]
- vcfuniqalleles(1) \f[B]vcfuniqalleles\f[R]
- wcFst(1) \f[B]wcFst\f[R]