Libvcflib-Tools

• abba-baba(1) \f[B]abba-baba\f[R]
• bFst(1) \f[B]bFst\f[R]
• dumpContigsFromHeader(1) \f[B]dumpContigsFromHeader\f[R]
• genotypeSummary(1) \f[B]genotypeSummary\f[R]
• hapLrt(1) \f[B]hapLrt\f[R]
• iHS(1) \f[B]iHS\f[R]
• meltEHH(1) \f[B]meltEHH\f[R]
• normalize-iHS(1) \f[B]normalize-iHS\f[R]
• permuteGPAT++(1) \f[B]permuteGPAT++\f[R]
• permuteSmooth(1) \f[B]permuteSmooth\f[R]
• pFst(1) \f[B]pFst\f[R]
• plotHaps(1) \f[B]plotHaps\f[R]
• popStats(1) \f[B]popStats\f[R]
• pVst(1) \f[B]pVst\f[R]
• segmentFst(1) \f[B]segmentFst\f[R]
• segmentIhs(1) \f[B]segmentIhs\f[R]
• sequenceDiversity(1) \f[B]sequenceDiversity\f[R]
• smoother(1) \f[B]smoother\f[R]
• vcf2dag(1) \f[B]vcf2dag\f[R]
• vcf2fasta(1) \f[B]vcf2fasta\f[R]
• vcf2tsv(1) \f[B]vcf2tsv\f[R]
• vcfaddinfo(1) \f[B]vcfaddinfo\f[R]
• vcfafpath(1) \f[B]vcfafpath\f[R]
• vcfallelicprimitives(1) \f[B]vcfallelicprimitives\f[R]
• vcfaltcount(1) \f[B]vcfaltcount\f[R]
• vcfannotate(1) \f[B]vcfannotate\f[R]
• vcfannotategenotypes(1) \f[B]vcfannotategenotypes\f[R]
• vcfbreakmulti(1) \f[B]vcfbreakmulti\f[R]
• vcfcat(1) \f[B]vcfcat\f[R]
• vcfcheck(1) \f[B]vcfcheck\f[R]
• vcfclassify(1) \f[B]vcfclassify\f[R]
• vcfcleancomplex(1) \f[B]vcfcleancomplex\f[R]
• vcfcombine(1) \f[B]vcfcombine\f[R]
• vcfcommonsamples(1) \f[B]vcfcommonsamples\f[R]
• vcfcountalleles(1) \f[B]vcfcountalleles\f[R]
• vcfcreatemulti(1) \f[B]vcfcreatemulti\f[R]
• vcfdistance(1) \f[B]vcfdistance\f[R]
• vcfecho(1) \f[B]vcfecho\f[R]
• vcfentropy(1) \f[B]vcfentropy\f[R]
• vcfevenregions(1) \f[B]vcfevenregions\f[R]
• vcffilter(1) \f[B]vcffilter\f[R]
• vcffixup(1) \f[B]vcffixup\f[R]
• vcfflatten(1) \f[B]vcfflatten\f[R]
• vcfgeno2alleles(1) \f[B]vcfgeno2alleles\f[R]
• vcfgeno2haplo(1) \f[B]vcfgeno2haplo\f[R]
• vcfgenosamplenames(1) \f[B]vcfgenosamplenames\f[R]
• vcfgenosummarize(1) \f[B]vcfgenosummarize\f[R]
• vcfgenotypecompare(1) \f[B]vcfgenotypecompare\f[R]
• vcfgenotypes(1) \f[B]vcfgenotypes\f[R]
• vcfglbound(1) \f[B]vcfglbound\f[R]
• vcfglxgt(1) \f[B]vcfglxgt\f[R]
• vcfhetcount(1) \f[B]vcfhetcount\f[R]
• vcfhethomratio(1) \f[B]vcfhethomratio\f[R]
• vcfindex(1) \f[B]vcfindex\f[R]
• vcfinfo2qual(1) \f[B]vcfinfo2qual\f[R]
• vcfinfosummarize(1) \f[B]vcfinfosummarize\f[R]
• vcfintersect(1) \f[B]vcfintersect\f[R]
• vcfkeepgeno(1) \f[B]vcfkeepgeno\f[R]
• vcfkeepinfo(1) \f[B]vcfkeepinfo\f[R]
• vcfkeepsamples(1) \f[B]vcfkeepsamples\f[R]
• vcfld(1) \f[B]vcfld\f[R]
• vcfleftalign(1) \f[B]vcfleftalign\f[R]
• vcflength(1) \f[B]vcflength\f[R]
• vcflib(1) \f[B]vcflib\f[R] index
• vcfnulldotslashdot(1) vcfnulldotslashdot converts single dots to ./. This is useful for some downstream analysis tools.
• vcfnumalt(1) \f[B]vcfnumalt\f[R]
• vcfoverlay(1) \f[B]vcfoverlay\f[R]
• vcfparsealts(1) \f[B]vcfparsealts\f[R]
• vcfprimers(1) \f[B]vcfprimers\f[R]
• vcfqual2info(1) \f[B]vcfqual2info\f[R]
• vcfrandom(1) \f[B]vcfrandom\f[R]
• vcfrandomsample(1) \f[B]vcfrandomsample\f[R]
• vcfremap(1) \f[B]vcfremap\f[R]
• vcfremoveaberrantgenotypes(1) \f[B]vcfremoveaberrantgenotypes\f[R]
• vcfremovesamples(1) \f[B]vcfremovesamples\f[R]
• vcfroc(1) \f[B]vcfroc\f[R]
• vcfsample2info(1) \f[B]vcfsample2info\f[R]
• vcfsamplediff(1) \f[B]vcfsamplediff\f[R]
• vcfsamplenames(1) \f[B]vcfsamplenames\f[R]
• vcfsitesummarize(1) \f[B]vcfsitesummarize\f[R]
• vcfstats(1) \f[B]vcfstats\f[R]
• vcfstreamsort(1) \f[B]vcfstreamsort\f[R]
• vcfuniq(1) \f[B]vcfuniq\f[R]
• vcfuniqalleles(1) \f[B]vcfuniqalleles\f[R]
• wcFst(1) \f[B]wcFst\f[R]