Mcl

• clm(1) perform various computations on graphs and clusterings
• clmclose(1) Fetch connected components from graphs or subgraphs
• clmdist(1) compute the distance between two or more partitions (clusterings).
• clmimac(1) Interpret Matrices (c.q. MCL iterands output by mcl) As Clusterings.
• clminfo(1) compute performance measures for graphs and clusterings.
• clminfo2(1) compute performance measures for graphs and clusterings.
• clmmate(1) compute best matches between two clusterings
• clmmeet(1) compute the intersection of a set of clusterings.
• clmoptics(1) implementation of the OPTICS reachability ordering
• clmorder(1) reorder clusterings conformal to inclusion structure
• clmresidue(1) extend clustering of subgraph to clustering of graph.
• clmvol(1) compute volatile nodes from a set of clusterings
• mcl(1) The Markov Cluster Algorithm, aka the MCL algorithm.
• mclcm(1) hierarchical clustering of graphs with mcl
• mcx(1) perform various computations on graphs and matrices
• mcxalter(1) various network transformations
• mcxarray(1) Transform array data to MCL matrices
• mcxclcf(1) compute the clustering coefficient of a graph
• mcxconvert(1) convert between mcx storage types
• mcxctty(1) compute betweenness centrality for network nodes or network edges
• mcxdiameter(1) compute the diameter of a graph
• mcxdump(1) dump matrices, optionally map indices to labels
• mcxerdos(1) compute shortest paths in a graph
• mcxi(1) a stack language interpreter for interaction with the mcl libraries.
• mcxload(1) load matrices and tab files from label format
• mcxmap(1) permute or remap the indices of graphs and matrices.
• mcxquery(1) compute simple graph statistics
• mcxrand(1) random shuffling, removal, addition, and perturbation of edges of graphs
• mcxsubs(1) extract submatrices (subgraphs) of a matrix (graph).