Mipe

• csv2mipe(1) Generates MIPE file based on 3 tab-delimited files
• genotype2mipe(1) Inserts SNP data into MIPE file
• mipe0_9to1_0(1) Reads a MIPE file version 0.9 and prints it in version 1.0
• mipe06to07(1) Reads a MIPE file version 0.6 and prints it in version 0.7
• mipe08to09(1) Reads a MIPE file version 0.8 and prints it in version 0.9
• mipe2dbSTS(1) Generates input file for submission to dbSTS
• mipe2fas(1) Generates FASTA file
• mipe2genotypes(1) Generates list of genotypes from a MIPE file
• mipe2html(1) Generates HTML page based on MIPE file
• mipe2pcroverview(1) Generates overview of PCRs from a MIPE file
• mipe2pcrprimers(1) Generates list of pcrprimers from a MIPE file
• mipe2putativesbeprimers(1) Generates list of putative SBE primers from a MIPE file
• mipe2sbeprimers(1) Generates list of SBE primers from a MIPE file
• mipe2snps(1) Generates list of SNPs from a MIPE file
• mipeCheckSanity(1) Check sanity of MIPE file, focussing on contents (vs 'form', that can be checked using xmllint)
• removePcrFromMipe(1) Removes PCR data from MIPE file
• removeSbeFromMipe(1) Removes SBE data from MIPE file
• removeSnpFromMipe(1) Removes SNP data from MIPE file
• sbe2mipe(1) Inserts SBE data into MIPE file
• snp2mipe(1) Inserts SNP data into MIPE file
• snpPosOnDesign(1) Adds pos_design to SNP
• snpPosOnSource(1) Adds pos_source to SNP