Mummer
- combineMUMs(1) package for sequence alignment of multiple genomes
- delta-filter(1) read a delta alignment file from either nucmer or promer and filters the alignments
- delta2blocks(1) extra tool for mummer from patch of mugsy to sort alignments
- delta2maf(1) extra tool for mummer from patch of mugsy to sort alignments
- dnadiff(1) package for sequence alignment of multiple genomes
- exact-tandems(1) package for sequence alignment of multiple genomes
- gaps(1) package for sequence alignment of multiple genomes
- mapview(1) package for sequence alignment of multiple genomes
- mgaps(1) package for sequence alignment of multiple genomes
- mummer-annotate(1) package for sequence alignment of multiple genomes
- mummer(1) package for sequence alignment of multiple genomes
- mummerplot(1) package for sequence alignment of multiple genomes
- nucmer(1) package for sequence alignment of multiple genomes
- nucmer2xfig(1) package for sequence alignment of multiple genomes
- promer(1) package for sequence alignment of multiple genomes
- repeat-match(1) package for sequence alignment of multiple genomes
- run-mummer1(1) package for sequence alignment of multiple genomes
- run-mummer3(1) package for sequence alignment of multiple genomes
- show-aligns(1) package for sequence alignment of multiple genomes
- show-coords(1) package for sequence alignment of multiple genomes
- show-diff(1) show diff information (part of mummer package)
- show-snps(1) package for sequence alignment of multiple genomes
- show-tiling(1) package for sequence alignment of multiple genomes