Ncbi-Tools-Bin
- asn2all(1) generate reports from ASN.1 biological data
- asn2asn(1) convert NCBI data between text and binary ASN.1
- asn2ff(1) convert ASN.1 biological data to a flat format (old version)
- asn2fsa(1) convert biological sequence data from ASN.1 to FASTA
- asn2gb(1) convert ASN.1 biological data to a GenBank-style flat format
- asn2idx(1) index ASN.1 Bioseq-sets for fast access to individual sequences
- asn2xml(1) translate biological data from ASN.1 to XML
- asndhuff(1) decompress compressed ASN.1 (CASN) files
- asndisc(1) check ASN.1 biological sequence records for discrepancies
- asnmacro(1) process ASN.1 biological data per Sequin macros
- asntool(1) process ASN.1 module specifications
- asnval(1) validate ASN.1 biological sequence records
- checksub(1) a validator for NCBI ASN.1 Seq-submit data
- cleanasn(1) clean up irregularities in NCBI ASN.1 objects
- debruijn(1) de Bruijn sequence generator
- errhdr(1) produce a C header file from a set of messages
- fa2htgs(1) formatter for high throughput genome sequencing project submissions
- findspl(1) find protein splice sites
- gbseqget(1) format sequences from GenBank as an XML GBSet
- gene2xml(1) convert NCBI Entrez Gene ASN.1 into XML
- getmesh(1) get MeSH terms from a Medline entry
- getpub(1) look up Medline entries by UID
- gil2bin(1) convert GenInfo integrated IDs to or from binary
- idfetch(1) retrieve biological data from the NCBI ID1 server
- indexpub(1) index an ASN.1 Pub-set by Medline UID
- insdseqget(1) format sequences from GenBank as an XML INSDSet
- makeset(1) build a Bioseq-set from Seq-entries
- nps2gps(1) convert nucleotide-protein sets to ASN.1 genomic product sets
- sortbyquote(1) sort C/C++ code by quoted regions
- spidey(1) align mRNA sequences to a genome
- subfuse(1) merge Genbank submissions
- taxblast(1) annotate BLAST output with taxonomic details
- tbl2asn(1) prepare a GenBank submission using an ASCII feature table
- trna2sap(1) convert tRNAscan-SE output to an ASN.1 Seq-annot object
- trna2tbl(1) convert tRNAscan-SE output to a Sequin feature table
- vecscreen(1) find nucleic acid segments of possible vector origin