Pftools

• 2ft(1) 2-frame translation of a DNA sequence into protein
• 6ft(1) 6-frame translation of a DNA sequence into protein
• pfdump(1) dump tool of pftools package
• pfgtop(1) convert a profile in
• pfhtop(1) convert a
• pfmake(1) generate a profile from a multiple sequence alignment
• pfscale(1) fit parameters of an extreme-value distribution to a profile score list
• pfscan(1) scan a protein or DNA sequence with a profile library
• pfsearch(1) search a protein or DNA sequence library for sequence segments
• pfsearchV2(1) search a protein or DNA sequence library for sequence segments
• pfsearchV3(1) search protein and DNA generalized profiles (version 3)
• pfw(1) weight sequences of a multiple sequence alignment
• psa(5) biological sequence alignment file format
• psa2msa(1) reformat PSA file to Pearson/Fasta multiple sequence alignment file
• ptof(1) convert a protein profile into a frame-search profile
• ptoh(1) converts a
• xpsa(5) extended psa header