Pftools
- 2ft(1) 2-frame translation of a DNA sequence into protein
- 6ft(1) 6-frame translation of a DNA sequence into protein
- pfdump(1) dump tool of pftools package
- pfgtop(1) convert a profile in
- pfhtop(1) convert a
- pfmake(1) generate a profile from a multiple sequence alignment
- pfscale(1) fit parameters of an extreme-value distribution to a profile score list
- pfscan(1) scan a protein or DNA sequence with a profile library
- pfsearch(1) search a protein or DNA sequence library for sequence segments
- pfsearchV2(1) search a protein or DNA sequence library for sequence segments
- pfsearchV3(1) search protein and DNA generalized profiles (version 3)
- pfw(1) weight sequences of a multiple sequence alignment
- psa(5) biological sequence alignment file format
- psa2msa(1) reformat PSA file to Pearson/Fasta multiple sequence alignment file
- ptof(1) convert a protein profile into a frame-search profile
- ptoh(1) converts a
- xpsa(5) extended psa header