Prime-Phylo

• chainsaw(1) Cut a gene tree based on a reconciliation
• mcmc_analysis(1) Analysis of the MCMC
• primeDLRS(1) Guest-in-host tree reconciliation tool
• primeDTLSR(1) Guest-in-host tree inference tool
• primeGEM(1) Guest-in-host tree reconciliation tool
• primeGSRf(1) Guest-in-host tree reconciliation tool
• reconcile(1) This program outputs the reconciliation that minimizes the number of
• reroot(1) Compute a (new) root for the tree.
• showtree(1) View and/or convert phylogenetic trees in the terminal.
• tree2leafnames(1) List the leaves of a tree
• treesize(1) Count the leaves of trees.