Rapmap

• rapmap_pseudoindex(1) rapmap module to build a k-mer-based index
• rapmap_pseudomap(1) rapmap module to map reads using a k-mer-based index
• rapmap_quasiindex(1) rapmap module to build a suffix array-based (SA) index
• rapmap_quasimap(1) rapmap module to map reads using the SA-based index
• rapmap(1) rapid sensitive and accurate DNA read mapping via quasi-mapping