Seer

• blast_top_hits(1) reduces a blast or blat output file to the top hit for each query sequence only
• blastn_to_phandango(1) create a plot file for visualisation in phandango
• combineKmers(1) basic algorithm to combine kmer counts across samples
• filter_seer(1) post filtering of significant kmers
• hits_to_fastq(1) create a fastq for mapping from significant kmers
• kmds(1) control for population structure
• map_back(1) context of significant kmers
• mapping_to_phandango(1) create a plot file for visualisation in phandango
• mash2matrix(1) create all pairwise distances between samples
• R_mds(1) project distance matrix into lower number of dimensions
• reformat_output(1) reformats output for easier reading as tsv
• seer(1) sequence element enrichment analysis