Seqan-Apps

• alf(1) Alignment free sequence comparison
• gustaf(1) Gustaf - Generic mUlti-SpliT Alignment Finder: Tool for split-read mapping allowing multiple splits.
• insegt(1) INtersecting SEcond Generation sequencing daTa with annotation
• mason_frag_sequencing(1) Fragment Sequencing Simulation
• mason_genome(1) Random Genome Simulation
• mason_materializer(1) VCF Materialization
• mason_methylation(1) Methylation Level Simulation
• micro_razers(1) Map small RNA reads possibly containing 3' adapter sequence
• pair_align(1) Pairwise alignment
• rabema_build_gold_standard(1) RABEMA Gold Standard Builder
• rabema_evaluate(1) RABEMA Evaluation
• rabema_prepare_sam(1) Prepare SAM For Rabema
• razers(1) Fast Read Mapping with Sensitivity Control
• razers3(1) Faster, fully sensitive read mapping
• sak(1) Slicing and dicing of FASTA/FASTQ files..
• seqan_tcoffee(1) Multiple sequence alignment
• snp_store(1) SnpStore
• splazers(1) Split-map read sequences
• stellar(1) the SwifT Exact LocaL AligneR
• tree_recon(1) Tree reconstruction
• yara_indexer(1) Yara Indexer
• yara_mapper(1) Yara Mapper