Sga
- sga-align(1) align reads to contigs
- sga-astat(1) Compute Myers' a-statistic for a set of contigs using the read alignments in in.bam
- sga-bam2de(1) Make a distance estimate file from a bam file of reads aligned to contigs
- sga-mergeDriver(1) generate sga merge commands from a list of files
- sga(1) String Graph Assembler: de novo genome assembler that uses string graphs