Subread

• exactSNP(1) toolkit for processing next-gen sequencing data
• featureCounts(1) toolkit for processing next-gen sequencing data
• flattenGTF(1) toolkit for processing next-gen sequencing data
• genRandomReads(1) toolkit for processing next-gen sequencing data
• propmapped(1) toolkit for processing next-gen sequencing data
• qualityScores(1) toolkit for processing next-gen sequencing data
• removeDup(1) toolkit for processing next-gen sequencing data
• repair(1) toolkit for processing next-gen sequencing data
• subindel(1) toolkit for processing next-gen sequencing data
• subjunc(1) toolkit for processing next-gen sequencing data
• sublong(1) toolkit for processing next-gen sequencing data
• subread-align(1) toolkit for processing next-gen sequencing data
• subread-buildindex(1) toolkit for processing next-gen sequencing data
• subread-fullscan(1) toolkit for processing next-gen sequencing data