Vmatch
- chain2dim(1) two-dimensional match chaining
- matchcluster(1) match clustering
- mkdna6idx(1) generate a six frame translation index
- mkvtree(1) construct index for sequence
- vendian(1) helper tool for endianness conversion
- vmatch(1) solve matching tasks
- vmatchselect(1) sort and select matches
- vseqinfo(1) obtain sequence information from index
- vseqselect(1) print selected sequences from index
- vstree2tex(1) pretty-print a virtual tree
- vsubseqselect(1) print selected subsequences from index